3D structure

PDB id
6DZI (explore in PDB, NAKB, or RNA 3D Hub)
Description
Cryo-EM Structure of Mycobacterium smegmatis 70S C(minus) ribosome 70S-MPY complex
Experimental method
ELECTRON MICROSCOPY
Resolution
3.46 Å

Loop

Sequence
UGUAG*CGCAGAUA
Length
13 nucleotides
Bulged bases
6DZI|1|h|A|682
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_6DZI_154 not in the Motif Atlas
Homologous match to IL_5J7L_035
Geometric discrepancy: 0.406
The information below is about IL_5J7L_035
Detailed Annotation
Kink-turn
Broad Annotation
No text annotation
Motif group
IL_01488.3
Basepair signature
cWW-tSS-tSH-L-R-tHS-L-cWW
Number of instances in this motif group
10

Unit IDs

6DZI|1|h|U|664
6DZI|1|h|G|665
6DZI|1|h|U|666
6DZI|1|h|A|667
6DZI|1|h|G|668
*
6DZI|1|h|C|679
6DZI|1|h|G|680
6DZI|1|h|C|681
6DZI|1|h|A|682
6DZI|1|h|G|683
6DZI|1|h|A|684
6DZI|1|h|U|685
6DZI|1|h|A|686

Current chains

Chain h
16S rRNA

Nearby chains

Chain A
Large subunit ribosomal RNA; LSU rRNA
Chain t
30S ribosomal protein S11

Coloring options:


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