IL_6DZI_154
3D structure
- PDB id
- 6DZI (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM Structure of Mycobacterium smegmatis 70S C(minus) ribosome 70S-MPY complex
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.46 Å
Loop
- Sequence
- UGUAG*CGCAGAUA
- Length
- 13 nucleotides
- Bulged bases
- 6DZI|1|h|A|682
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_6DZI_154 not in the Motif Atlas
- Homologous match to IL_5J7L_035
- Geometric discrepancy: 0.406
- The information below is about IL_5J7L_035
- Detailed Annotation
- Kink-turn
- Broad Annotation
- No text annotation
- Motif group
- IL_01488.3
- Basepair signature
- cWW-tSS-tSH-L-R-tHS-L-cWW
- Number of instances in this motif group
- 10
Unit IDs
6DZI|1|h|U|664
6DZI|1|h|G|665
6DZI|1|h|U|666
6DZI|1|h|A|667
6DZI|1|h|G|668
*
6DZI|1|h|C|679
6DZI|1|h|G|680
6DZI|1|h|C|681
6DZI|1|h|A|682
6DZI|1|h|G|683
6DZI|1|h|A|684
6DZI|1|h|U|685
6DZI|1|h|A|686
Current chains
- Chain h
- 16S rRNA
Nearby chains
- Chain A
- Large subunit ribosomal RNA; LSU rRNA
- Chain t
- 30S ribosomal protein S11
Coloring options: