IL_6DZI_171

3D structure

PDB id

6DZI (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM Structure of Mycobacterium smegmatis 70S C(minus) ribosome 70S-MPY complex

Experimental method

ELECTRON MICROSCOPY

Resolution

3.46 Å

Loop

Sequence

GCUG*CGAAUC

Length

10 nucleotides

Bulged bases

6DZI|1|h|U|1238, 6DZI|1|h|A|1261

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6DZI_171 not in the Motif Atlas

Homologous match to IL_5J7L_055

Geometric discrepancy: 0.264

The information below is about IL_5J7L_055

Detailed Annotation

180 degree turn

Broad Annotation

No text annotation

Motif group

IL_11344.2

Basepair signature

cWW-cSS-L-cWW

Number of instances in this motif group

2

Unit IDs

6DZI|1|h|G|1236
6DZI|1|h|C|1237
6DZI|1|h|U|1238
6DZI|1|h|G|1239
*
6DZI|1|h|C|1258
6DZI|1|h|G|1259
6DZI|1|h|A|1260
6DZI|1|h|A|1261
6DZI|1|h|U|1262
6DZI|1|h|C|1263

Current chains

Chain h

16S rRNA

Nearby chains

Chain 9

30S ribosomal protein S14

Chain k

30S ribosomal protein S3

Chain s

30S ribosomal protein S10