IL_6DZI_188

3D structure

PDB id

6DZI (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM Structure of Mycobacterium smegmatis 70S C(minus) ribosome 70S-MPY complex

Experimental method

ELECTRON MICROSCOPY

Resolution

3.46 Å

Loop

Sequence

GUUG*CGAC

Length

8 nucleotides

Bulged bases

None detected

QA status

Self-complementary:

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6DZI_188 not in the Motif Atlas

Geometric match to IL_1D4R_003

Geometric discrepancy: 0.2924

The information below is about IL_1D4R_003

Detailed Annotation

Tandem non-canonical cWW pairs

Broad Annotation

No text annotation

Motif group

IL_15225.1

Basepair signature

cWW-cWW-cWW-cWW

Number of instances in this motif group

33

Unit IDs

6DZI|1|A|G|366
6DZI|1|A|U|367
6DZI|1|A|U|368
6DZI|1|A|G|369
*
6DZI|1|A|C|433
6DZI|1|A|G|434
6DZI|1|A|A|435
6DZI|1|A|C|436

Current chains

Chain A

23 S rRNA (3119-MER)

Nearby chains