IL_6DZK_061
3D structure
- PDB id
- 6DZK (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM Structure of Mycobacterium smegmatis C(minus) 30S ribosomal subunit with MPY
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.6 Å
Loop
- Sequence
- CCGAAG*CGAAG
- Length
- 11 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_6DZK_061 not in the Motif Atlas
- Geometric match to IL_5J7L_063
- Geometric discrepancy: 0.2672
- The information below is about IL_5J7L_063
- Detailed Annotation
- Triple sheared related
- Broad Annotation
- Triple sheared
- Motif group
- IL_80231.1
- Basepair signature
- cWW-L-R-L-R-L-R-tHS-cWW
- Number of instances in this motif group
- 2
Unit IDs
6DZK|1|A|C|1413
6DZK|1|A|C|1414
6DZK|1|A|G|1415
6DZK|1|A|A|1416
6DZK|1|A|A|1417
6DZK|1|A|G|1418
*
6DZK|1|A|C|1450
6DZK|1|A|G|1451
6DZK|1|A|A|1452
6DZK|1|A|A|1453
6DZK|1|A|G|1454
Current chains
- Chain A
- 16S rRNA
Nearby chains
- Chain T
- 30S ribosomal protein S20
Coloring options: