IL_6DZP_046
3D structure
- PDB id
- 6DZP (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM Structure of Mycobacterium smegmatis C(minus) 50S ribosomal subunit
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.42 Å
Loop
- Sequence
- CGGUGAAG*UGGAG
- Length
- 13 nucleotides
- Bulged bases
- 6DZP|1|A|U|1325
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_6DZP_046 not in the Motif Atlas
- Homologous match to IL_7A0S_043
- Geometric discrepancy: 0.1867
- The information below is about IL_7A0S_043
- Detailed Annotation
- Kink-turn
- Broad Annotation
- No text annotation
- Motif group
- IL_90775.2
- Basepair signature
- cWW-tSS-tSH-L-tHS-tHS-cWW
- Number of instances in this motif group
- 30
Unit IDs
6DZP|1|A|C|1322
6DZP|1|A|G|1323
6DZP|1|A|G|1324
6DZP|1|A|U|1325
6DZP|1|A|G|1326
6DZP|1|A|A|1327
6DZP|1|A|A|1328
6DZP|1|A|G|1329
*
6DZP|1|A|U|1349
6DZP|1|A|G|1350
6DZP|1|A|G|1351
6DZP|1|A|A|1352
6DZP|1|A|G|1353
Current chains
- Chain A
- 23S rRNA
Nearby chains
- Chain R
- 50S ribosomal protein L20
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