IL_6EK0_005
3D structure
- PDB id
- 6EK0 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- High-resolution cryo-EM structure of the human 80S ribosome
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.9 Å
Loop
- Sequence
- CUGAAUUU*AUUAGUCAG
- Length
- 17 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_6EK0_005 not in the Motif Atlas
- Geometric match to IL_4WF9_008
- Geometric discrepancy: 0.1605
- The information below is about IL_4WF9_008
- Detailed Annotation
- 9x8 Sarcin-Ricin; G-bulge
- Broad Annotation
- Sarcin-Ricin; G-bulge
- Motif group
- IL_93502.2
- Basepair signature
- cWW-L-R-tSH-tHW-tHH-tHS-cWW-cWW
- Number of instances in this motif group
- 7
Unit IDs
6EK0|1|L5|C|30
6EK0|1|L5|U|31
6EK0|1|L5|G|32
6EK0|1|L5|A|33
6EK0|1|L5|A|34
6EK0|1|L5|U|35
6EK0|1|L5|U|36
6EK0|1|L5|U|37
*
6EK0|1|L5|A|44
6EK0|1|L5|U|45
6EK0|1|L5|U|46
6EK0|1|L5|A|47
6EK0|1|L5|G|48
6EK0|1|L5|U|49
6EK0|1|L5|C|50
6EK0|1|L5|A|51
6EK0|1|L5|G|52
Current chains
- Chain L5
- 28S ribosomal RNA
Nearby chains
- Chain LL
- 60S ribosomal protein L13
- Chain LN
- 60S ribosomal protein L15
- Chain La
- 60S ribosomal protein L27a
- Chain Lj
- 60S ribosomal protein L37
- Chain Lo
- 60S ribosomal protein L36a
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