IL_6EK0_059
3D structure
- PDB id
- 6EK0 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- High-resolution cryo-EM structure of the human 80S ribosome
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.9 Å
Loop
- Sequence
- CUCGCAGACCCGACGCCCGCCACG*CG
- Length
- 26 nucleotides
- Bulged bases
- 6EK0|1|L5|A|1699, 6EK0|1|L5|G|1700, 6EK0|1|L5|A|1701, 6EK0|1|L5|C|1707, 6EK0|1|L5|G|1708, 6EK0|1|L5|C|1709, 6EK0|1|L5|C|1714
- QA status
- Missing nucleotides
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_6EK0_059 not in the Motif Atlas
- Geometric match to IL_7RQB_061
- Geometric discrepancy: 0.3975
- The information below is about IL_7RQB_061
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_52493.1
- Basepair signature
- cWW-L-cWW-L-L
- Number of instances in this motif group
- 2
Unit IDs
6EK0|1|L5|C|1694
6EK0|1|L5|U|1695
6EK0|1|L5|C|1696
6EK0|1|L5|G|1697
6EK0|1|L5|C|1698
6EK0|1|L5|A|1699
6EK0|1|L5|G|1700
6EK0|1|L5|A|1701
6EK0|1|L5|C|1702
6EK0|1|L5|C|1703
6EK0|1|L5|C|1704
6EK0|1|L5|G|1705
6EK0|1|L5|A|1706
6EK0|1|L5|C|1707
6EK0|1|L5|G|1708
6EK0|1|L5|C|1709
6EK0|1|L5|C|1714
6EK0|1|L5|C|1715
6EK0|1|L5|G|1716
6EK0|1|L5|C|1717
6EK0|1|L5|C|1718
6EK0|1|L5|A|1719
6EK0|1|L5|C|1720
6EK0|1|L5|G|1721
*
6EK0|1|L5|C|1841
6EK0|1|L5|G|1842
Current chains
- Chain L5
- 28S ribosomal RNA
Nearby chains
- Chain LC
- 60S ribosomal protein L4
- Chain LF
- 60S ribosomal protein L7
- Chain LQ
- 60S ribosomal protein L18
- Chain LT
- 60S ribosomal protein L21
- Chain Lb
- 60S ribosomal protein L29
Coloring options: