IL_6EK0_086

3D structure

PDB id

6EK0 (explore in PDB, NAKB, or RNA 3D Hub)

Description

High-resolution cryo-EM structure of the human 80S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

G(7MG)G*CCC

Length

6 nucleotides

Bulged bases

None detected

QA status

Self-complementary:

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6EK0_086 not in the Motif Atlas

Geometric match to IL_3LA5_001

Geometric discrepancy: 0.1272

The information below is about IL_3LA5_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_86319.3

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

269

Unit IDs

6EK0|1|L5|G|2521
6EK0|1|L5|7MG|2522
6EK0|1|L5|G|2523
*
6EK0|1|L5|C|2532
6EK0|1|L5|C|2533
6EK0|1|L5|C|2534

Current chains

Chain L5

28S ribosomal RNA

Nearby chains

Chain LR

60S ribosomal protein L19

Chain LX

60S ribosomal protein L23a

Chain Lg

60S ribosomal protein L34

Chain Lk

60S ribosomal protein L38