IL_6EK0_146

3D structure

PDB id

6EK0 (explore in PDB, NAKB, or RNA 3D Hub)

Description

High-resolution cryo-EM structure of the human 80S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

GAUUAU*AGAAUC

Length

12 nucleotides

Bulged bases

6EK0|1|L5|A|4708

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6EK0_146 not in the Motif Atlas

Geometric match to IL_5J7L_350

Geometric discrepancy: 0.226

The information below is about IL_5J7L_350

Detailed Annotation

UAA/GAN with extra cWW

Broad Annotation

No text annotation

Motif group

IL_49767.8

Basepair signature

cWW-cWW-tWH-L-tHS-cWW

Number of instances in this motif group

6

Unit IDs

6EK0|1|L5|G|4680
6EK0|1|L5|A|4681
6EK0|1|L5|U|4682
6EK0|1|L5|U|4683
6EK0|1|L5|A|4684
6EK0|1|L5|U|4685
*
6EK0|1|L5|A|4705
6EK0|1|L5|G|4706
6EK0|1|L5|A|4707
6EK0|1|L5|A|4708
6EK0|1|L5|U|4709
6EK0|1|L5|C|4710

Current chains

Chain L5

28S ribosomal RNA

Nearby chains

Chain LH

60S ribosomal protein L9

Chain LO

60S ribosomal protein L13a

Chain Lm

Ubiquitin-60S ribosomal protein L40