IL_6EK0_154

3D structure

PDB id

6EK0 (explore in PDB, NAKB, or RNA 3D Hub)

Description

High-resolution cryo-EM structure of the human 80S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

GGCG*CCC

Length

7 nucleotides

Bulged bases

6EK0|1|L5|C|4900

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6EK0_154 not in the Motif Atlas

Geometric match to IL_1M5K_004

Geometric discrepancy: 0.3193

The information below is about IL_1M5K_004

Detailed Annotation

Isolated cWH basepair

Broad Annotation

Isolated cWH basepair

Motif group

IL_86319.3

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

269

Unit IDs

6EK0|1|L5|G|4898
6EK0|1|L5|G|4899
6EK0|1|L5|C|4900
6EK0|1|L5|G|4901
*
6EK0|1|L5|C|4920
6EK0|1|L5|C|4921
6EK0|1|L5|C|4922

Current chains

Chain L5

28S ribosomal RNA

Nearby chains