IL_6EK0_242

3D structure

PDB id

6EK0 (explore in PDB, NAKB, or RNA 3D Hub)

Description

High-resolution cryo-EM structure of the human 80S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

UUAC*GUCCCCCAA

Length

13 nucleotides

Bulged bases

6EK0|1|S2|C|1434

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6EK0_242 not in the Motif Atlas

Geometric match to IL_4K27_001

Geometric discrepancy: 0.2135

The information below is about IL_4K27_001

Detailed Annotation

Tandem non-canonical cWW pairs

Broad Annotation

No text annotation

Motif group

IL_15225.3

Basepair signature

cWW-cWW-cWW-cWW

Number of instances in this motif group

38

Unit IDs

6EK0|1|S2|U|1407
6EK0|1|S2|U|1408
6EK0|1|S2|A|1409
6EK0|1|S2|C|1410
*
6EK0|1|S2|G|1431
6EK0|1|S2|U|1432
6EK0|1|S2|C|1433
6EK0|1|S2|C|1434
6EK0|1|S2|C|1435
6EK0|1|S2|C|1436
6EK0|1|S2|C|1437
6EK0|1|S2|A|1438
6EK0|1|S2|A|1439

Current chains

Chain S2

18S ribosomal RNA

Nearby chains

Chain SQ

40S ribosomal protein S16

Chain SU

40S ribosomal protein S20