IL_6EK0_298

3D structure

PDB id

6EK0 (explore in PDB, NAKB, or RNA 3D Hub)

Description

High-resolution cryo-EM structure of the human 80S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

UC(E3C)A*UCCG

Length

8 nucleotides

Bulged bases

None detected

QA status

Modified nucleotides: E3C

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6EK0_298 not in the Motif Atlas

Geometric match to IL_7LO9_003

Geometric discrepancy: 0.2572

The information below is about IL_7LO9_003

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_36940.4

Basepair signature

cWW-tSH-tWW-cWW

Number of instances in this motif group

5

Unit IDs

6EK0|1|S2|U|566
6EK0|1|S2|C|567
6EK0|1|S2|E3C|568
6EK0|1|S2|A|569
*
6EK0|1|S2|U|581
6EK0|1|S2|C|582
6EK0|1|S2|C|583
6EK0|1|S2|G|584

Current chains

Chain S2

18S ribosomal RNA

Nearby chains

Chain SJ

40S ribosomal protein S9

Chain SY

40S ribosomal protein S24