IL_6ELZ_027

3D structure

PDB id

6ELZ (explore in PDB, NAKB, or RNA 3D Hub)

Description

State E (TAP-Flag-Ytm1 E80A) - Visualizing the assembly pathway of nucleolar pre-60S ribosmes

Experimental method

ELECTRON MICROSCOPY

Resolution

3.3 Å

Loop

Sequence

GUGAAG*UGGAGGC

Length

13 nucleotides

Bulged bases

6ELZ|1|1|G|860

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6ELZ_027 not in the Motif Atlas

Geometric match to IL_3FTF_001

Geometric discrepancy: 0.2013

The information below is about IL_3FTF_001

Detailed Annotation

Quadruple sheared

Broad Annotation

No text annotation

Motif group

IL_71841.1

Basepair signature

cWW-tSH-L-R-L-R-tHS-cWW

Number of instances in this motif group

4

Unit IDs

6ELZ|1|1|G|833
6ELZ|1|1|U|834
6ELZ|1|1|G|835
6ELZ|1|1|A|836
6ELZ|1|1|A|837
6ELZ|1|1|G|838
*
6ELZ|1|1|U|855
6ELZ|1|1|G|856
6ELZ|1|1|G|857
6ELZ|1|1|A|858
6ELZ|1|1|G|859
6ELZ|1|1|G|860
6ELZ|1|1|C|861

Current chains

Chain 1

25S ribosomal RNA

Nearby chains

Chain R

60S ribosomal protein L19-A