IL_6ELZ_116

3D structure

PDB id

6ELZ (explore in PDB, NAKB, or RNA 3D Hub)

Description

State E (TAP-Flag-Ytm1 E80A) - Visualizing the assembly pathway of nucleolar pre-60S ribosmes

Experimental method

ELECTRON MICROSCOPY

Resolution

3.3 Å

Loop

Sequence

GA*UACC

Length

6 nucleotides

Bulged bases

6ELZ|1|1|A|2808

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6ELZ_116 not in the Motif Atlas

Homologous match to IL_8P9A_322

Geometric discrepancy: 0.3838

The information below is about IL_8P9A_322

Detailed Annotation

Minor groove platform

Broad Annotation

No text annotation

Motif group

IL_34520.3

Basepair signature

cWW-cSH-cWW

Number of instances in this motif group

61

Unit IDs

6ELZ|1|1|G|2412
6ELZ|1|1|A|2413
*
6ELZ|1|1|U|2807
6ELZ|1|1|A|2808
6ELZ|1|1|C|2809
6ELZ|1|1|C|2810

Current chains

Chain 1

25S ribosomal RNA

Nearby chains

Chain J

rRNA-processing protein EBP2

Chain l

60S ribosome subunit biogenesis protein NIP7

Chain r

Ribosome biogenesis protein NSA2