IL_6EM1_015
3D structure
- PDB id
- 6EM1 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- State C (Nsa1-TAP Flag-Ytm1) - Visualizing the assembly pathway of nucleolar pre-60S ribosomes
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.6 Å
Loop
- Sequence
- GUUUU*AUUUC
- Length
- 10 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_6EM1_015 not in the Motif Atlas
- Geometric match to IL_5BTM_001
- Geometric discrepancy: 0.2633
- The information below is about IL_5BTM_001
- Detailed Annotation
- Triple non-canonical cWW pairs
- Broad Annotation
- No text annotation
- Motif group
- IL_71154.3
- Basepair signature
- cWW-cWW-cWW-cWW-cWW
- Number of instances in this motif group
- 17
Unit IDs
6EM1|1|1|G|445
6EM1|1|1|U|446
6EM1|1|1|U|447
6EM1|1|1|U|448
6EM1|1|1|U|449
*
6EM1|1|1|A|485
6EM1|1|1|U|486
6EM1|1|1|U|487
6EM1|1|1|U|488
6EM1|1|1|C|489
Current chains
- Chain 1
- 25S ribosomal RNA
Nearby chains
- Chain 3
- Protein MAK16
- Chain 5
- Ribosome biogenesis protein NSA1
- Chain E
- 60S ribosomal protein L6-A
- Chain x
- Ribosome production factor 1
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