IL_6EM1_045
3D structure
- PDB id
- 6EM1 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- State C (Nsa1-TAP Flag-Ytm1) - Visualizing the assembly pathway of nucleolar pre-60S ribosomes
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.6 Å
Loop
- Sequence
- GUAGUAG*CGAAAC
- Length
- 13 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_6EM1_045 not in the Motif Atlas
- Homologous match to IL_8C3A_065
- Geometric discrepancy: 0.1384
- The information below is about IL_8C3A_065
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_76042.3
- Basepair signature
- cWW-tSH-tHH-cSH-tWH-tHS-cWW
- Number of instances in this motif group
- 9
Unit IDs
6EM1|1|1|G|1444
6EM1|1|1|U|1445
6EM1|1|1|A|1446
6EM1|1|1|G|1447
6EM1|1|1|U|1448
6EM1|1|1|A|1449
6EM1|1|1|G|1450
*
6EM1|1|1|C|2354
6EM1|1|1|G|2355
6EM1|1|1|A|2356
6EM1|1|1|A|2357
6EM1|1|1|A|2358
6EM1|1|1|C|2359
Current chains
- Chain 1
- 25S ribosomal RNA
Nearby chains
- Chain 2
- 5.8S ribosomal RNA; 5.8S rRNA
- Chain C
- 60S ribosomal protein L4-A
- Chain P
- 60S ribosomal protein L17-A
Coloring options: