IL_8C3A_065

3D structure

PDB id

8C3A (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of ailanthone bound to the Candida albicans 80S ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3 Å

Loop

Sequence

GUAGUAG*CGAAAC

Length

13 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_76042.3

Basepair signature

cWW-tSH-tHH-cSH-tWH-tHS-cWW

Number of instances in this motif group

9

Unit IDs

8C3A|1|1|G|1440
8C3A|1|1|U|1441
8C3A|1|1|A|1442
8C3A|1|1|G|1443
8C3A|1|1|U|1444
8C3A|1|1|A|1445
8C3A|1|1|G|1446
*
8C3A|1|1|C|2332
8C3A|1|1|G|2333
8C3A|1|1|A|2334
8C3A|1|1|A|2335
8C3A|1|1|A|2336
8C3A|1|1|C|2337

Current chains

Chain 1

25S

Nearby chains

Chain 4

5.8S ribosomal RNA; 5.8S rRNA

Chain l

60S ribosomal protein L4-B

Chain x

Ribosomal protein L22