IL_6EML_004
3D structure
- PDB id
- 6EML (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of a late pre-40S ribosomal subunit from Saccharomyces cerevisiae
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.6 Å
Loop
- Sequence
- GAUUAAG*CGC
- Length
- 10 nucleotides
- Bulged bases
- 6EML|1|2|U|45, 6EML|1|2|A|47
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_6EML_004 not in the Motif Atlas
- Homologous match to IL_4V88_387
- Geometric discrepancy: 0.1314
- The information below is about IL_4V88_387
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_77761.1
- Basepair signature
- cWW-L-R-L-cWW-L-L
- Number of instances in this motif group
- 2
Unit IDs
6EML|1|2|G|42
6EML|1|2|A|43
6EML|1|2|U|44
6EML|1|2|U|45
6EML|1|2|A|46
6EML|1|2|A|47
6EML|1|2|G|48
*
6EML|1|2|C|431
6EML|1|2|G|432
6EML|1|2|C|433
Current chains
- Chain 2
- pre-18S ribosomal RNA
Nearby chains
- Chain V
- 40S ribosomal protein S8-A
- Chain c
- 40S ribosomal protein S23-A
- Chain t
- Ribosome biogenesis protein TSR1
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