IL_6EML_011

3D structure

PDB id

6EML (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of a late pre-40S ribosomal subunit from Saccharomyces cerevisiae

Experimental method

ELECTRON MICROSCOPY

Resolution

3.6 Å

Loop

Sequence

GUAUAAC*GCUAAUAC

Length

15 nucleotides

Bulged bases

6EML|1|2|U|170

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6EML_011 not in the Motif Atlas

Homologous match to IL_4V88_394

Geometric discrepancy: 0.1334

The information below is about IL_4V88_394

Detailed Annotation

tWH-tWH-tHW-tHW

Broad Annotation

No text annotation

Motif group

IL_80604.3

Basepair signature

cWW-cWW-tWH-tWH-tHW-L-R-cWW

Number of instances in this motif group

4

Unit IDs

6EML|1|2|G|143
6EML|1|2|U|144
6EML|1|2|A|145
6EML|1|2|U|146
6EML|1|2|A|147
6EML|1|2|A|148
6EML|1|2|C|149
*
6EML|1|2|G|165
6EML|1|2|C|166
6EML|1|2|U|167
6EML|1|2|A|168
6EML|1|2|A|169
6EML|1|2|U|170
6EML|1|2|A|171
6EML|1|2|C|172

Current chains

Chain 2

pre-18S ribosomal RNA

Nearby chains

Chain T

40S ribosomal protein S6-A

Chain d

40S ribosomal protein S24-A