IL_6EML_046
3D structure
- PDB id
- 6EML (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of a late pre-40S ribosomal subunit from Saccharomyces cerevisiae
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.6 Å
Loop
- Sequence
- AGUAU*AGACU
- Length
- 10 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_6EML_046 not in the Motif Atlas
- Geometric match to IL_4LFB_065
- Geometric discrepancy: 0.2564
- The information below is about IL_4LFB_065
- Detailed Annotation
- Triple non-canonical cWW pairs
- Broad Annotation
- No text annotation
- Motif group
- IL_71154.3
- Basepair signature
- cWW-cWW-cWW-cWW-cWW
- Number of instances in this motif group
- 17
Unit IDs
6EML|1|2|A|884
6EML|1|2|G|885
6EML|1|2|U|886
6EML|1|2|A|887
6EML|1|2|U|888
*
6EML|1|2|A|924
6EML|1|2|G|925
6EML|1|2|A|926
6EML|1|2|C|927
6EML|1|2|U|928
Current chains
- Chain 2
- pre-18S ribosomal RNA
Nearby chains
- Chain Q
- 40S ribosomal protein S1-A
- Chain Z
- 40S ribosomal protein S14-A
Coloring options: