IL_6EML_072

3D structure

PDB id

6EML (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of a late pre-40S ribosomal subunit from Saccharomyces cerevisiae

Experimental method

ELECTRON MICROSCOPY

Resolution

3.6 Å

Loop

Sequence

CUA*UGGAAG

Length

9 nucleotides

Bulged bases

6EML|1|2|U|1390

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6EML_072 not in the Motif Atlas

Geometric match to IL_4V88_458

Geometric discrepancy: 0.2171

The information below is about IL_4V88_458

Detailed Annotation

Major groove platform; stack outside cWW

Broad Annotation

Major groove platform

Motif group

IL_58032.1

Basepair signature

cWW-tWH-cWW-L-L-R

Number of instances in this motif group

2

Unit IDs

6EML|1|2|C|1389
6EML|1|2|U|1390
6EML|1|2|A|1391
*
6EML|1|2|U|1407
6EML|1|2|G|1408
6EML|1|2|G|1409
6EML|1|2|A|1410
6EML|1|2|A|1411
6EML|1|2|G|1412

Current chains

Chain 2

pre-18S ribosomal RNA

Nearby chains

Chain B

40S ribosomal protein S5

Chain C

40S ribosomal protein S17-A

Chain F

40S ribosomal protein S16-A