IL_6EML_073

3D structure

PDB id

6EML (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of a late pre-40S ribosomal subunit from Saccharomyces cerevisiae

Experimental method

ELECTRON MICROSCOPY

Resolution

3.6 Å

Loop

Sequence

GCCAGCGA*UUGUGAAAC

Length

17 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6EML_073 not in the Motif Atlas

Homologous match to IL_4V88_459

Geometric discrepancy: 0.1643

The information below is about IL_4V88_459

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_10447.1

Basepair signature

cWW-tWW-L-R-L-R-L-R-L-tHW-R-L-cWW

Number of instances in this motif group

2

Unit IDs

6EML|1|2|G|1480
6EML|1|2|C|1481
6EML|1|2|C|1482
6EML|1|2|A|1483
6EML|1|2|G|1484
6EML|1|2|C|1485
6EML|1|2|G|1486
6EML|1|2|A|1487
*
6EML|1|2|U|1519
6EML|1|2|U|1520
6EML|1|2|G|1521
6EML|1|2|U|1522
6EML|1|2|G|1523
6EML|1|2|A|1524
6EML|1|2|A|1525
6EML|1|2|A|1526
6EML|1|2|C|1527

Current chains

Chain 2

pre-18S ribosomal RNA

Nearby chains

Chain B

40S ribosomal protein S5

Chain F

40S ribosomal protein S16-A

Chain I

40S ribosomal protein S19-A