IL_6EML_081
3D structure
- PDB id
- 6EML (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of a late pre-40S ribosomal subunit from Saccharomyces cerevisiae
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.6 Å
Loop
- Sequence
- UGAG*CAAA
- Length
- 8 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_6EML_081 not in the Motif Atlas
- Homologous match to IL_4V88_471
- Geometric discrepancy: 0.138
- The information below is about IL_4V88_471
- Detailed Annotation
- Double sheared
- Broad Annotation
- Double sheared
- Motif group
- IL_09705.12
- Basepair signature
- cWW-tSH-tHS-cWW
- Number of instances in this motif group
- 35
Unit IDs
6EML|1|2|U|1669
6EML|1|2|G|1670
6EML|1|2|A|1671
6EML|1|2|G|1672
*
6EML|1|2|C|1729
6EML|1|2|A|1730
6EML|1|2|A|1731
6EML|1|2|A|1732
Current chains
- Chain 2
- pre-18S ribosomal RNA
Nearby chains
- Chain T
- 40S ribosomal protein S6-A
- Chain V
- 40S ribosomal protein S8-A
Coloring options: