IL_6EML_085

3D structure

PDB id

6EML (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of a late pre-40S ribosomal subunit from Saccharomyces cerevisiae

Experimental method

ELECTRON MICROSCOPY

Resolution

3.6 Å

Loop

Sequence

GGGA*UACC

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6EML_085 not in the Motif Atlas

Geometric match to IL_1D4R_001

Geometric discrepancy: 0.3986

The information below is about IL_1D4R_001

Detailed Annotation

Tandem non-canonical cWW pairs

Broad Annotation

No text annotation

Motif group

IL_15225.2

Basepair signature

cWW-cWW-cWW-cWW

Number of instances in this motif group

39

Unit IDs

6EML|1|2|G|388
6EML|1|2|G|389
6EML|1|2|G|390
6EML|1|2|A|391
*
6EML|1|2|U|406
6EML|1|2|A|407
6EML|1|2|C|408
6EML|1|2|C|409

Current chains

Chain 2

pre-18S ribosomal RNA

Nearby chains

Chain T

40S ribosomal protein S6-A

Chain V

40S ribosomal protein S8-A

Chain t

Ribosome biogenesis protein TSR1