IL_6EML_092

3D structure

PDB id

6EML (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of a late pre-40S ribosomal subunit from Saccharomyces cerevisiae

Experimental method

ELECTRON MICROSCOPY

Resolution

3.6 Å

Loop

Sequence

AUAAGGAUUG*CUUGAUUU

Length

18 nucleotides

Bulged bases

6EML|1|2|G|1228

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6EML_092 not in the Motif Atlas

Homologous match to IL_8P9A_470

Geometric discrepancy: 0.3431

The information below is about IL_8P9A_470

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_28304.1

Basepair signature

cWW-R-L-R-L-R-L-R-L-L-L-cWW-cWW

Number of instances in this motif group

1

Unit IDs

6EML|1|2|A|1224
6EML|1|2|U|1225
6EML|1|2|A|1226
6EML|1|2|A|1227
6EML|1|2|G|1228
6EML|1|2|G|1229
6EML|1|2|A|1230
6EML|1|2|U|1231
6EML|1|2|U|1232
6EML|1|2|G|1233
*
6EML|1|2|C|1252
6EML|1|2|U|1253
6EML|1|2|U|1254
6EML|1|2|G|1255
6EML|1|2|A|1256
6EML|1|2|U|1257
6EML|1|2|U|1258
6EML|1|2|U|1259

Current chains

Chain 2

pre-18S ribosomal RNA

Nearby chains

Chain D

40S ribosomal protein S12

Chain N

Ubiquitin-40S ribosomal protein S31

Chain e

Essential nuclear protein 1