IL_6ENF_122

3D structure

PDB id

6ENF (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of a polyproline-stalled ribosome in the absence of EF-P

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

GGAUAAC*GCUAAUAC

Length

15 nucleotides

Bulged bases

6ENF|1|a|U|173

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6ENF_122 not in the Motif Atlas

Homologous match to IL_5J7L_012

Geometric discrepancy: 0.1545

The information below is about IL_5J7L_012

Detailed Annotation

tWH-tWH-tHW-tHW

Broad Annotation

No text annotation

Motif group

IL_80604.6

Basepair signature

cWW-cWW-tWH-tWH-tHW-tHW-cWW

Number of instances in this motif group

3

Unit IDs

6ENF|1|a|G|147
6ENF|1|a|G|148
6ENF|1|a|A|149
6ENF|1|a|U|150
6ENF|1|a|A|151
6ENF|1|a|A|152
6ENF|1|a|C|153
*
6ENF|1|a|G|168
6ENF|1|a|C|169
6ENF|1|a|U|170
6ENF|1|a|A|171
6ENF|1|a|A|172
6ENF|1|a|U|173
6ENF|1|a|A|174
6ENF|1|a|C|175

Current chains

Chain a

16S ribosomal RNA

Nearby chains

Chain t

30S ribosomal protein S20