IL_6ENJ_070

3D structure

PDB id

6ENJ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Polyproline-stalled ribosome in the presence of A+P site tRNA and elongation-factor P (EF-P)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.7 Å

Loop

Sequence

UGCAAAC*GGACGUAUA

Length

16 nucleotides

Bulged bases

6ENJ|1|A|A|1801, 6ENJ|1|A|C|1816, 6ENJ|1|A|U|1820

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6ENJ_070 not in the Motif Atlas

Homologous match to IL_5J7L_313

Geometric discrepancy: 0.105

The information below is about IL_5J7L_313

Detailed Annotation

Kink-turn related

Broad Annotation

No text annotation

Motif group

IL_17069.5

Basepair signature

cWW-tSH-tHH-cSS-tWW-tHH-tSS-cWW

Number of instances in this motif group

5

Unit IDs

6ENJ|1|A|U|1798
6ENJ|1|A|G|1799
6ENJ|1|A|C|1800
6ENJ|1|A|A|1801
6ENJ|1|A|A|1802
6ENJ|1|A|A|1803
6ENJ|1|A|C|1804
*
6ENJ|1|A|G|1813
6ENJ|1|A|G|1814
6ENJ|1|A|A|1815
6ENJ|1|A|C|1816
6ENJ|1|A|G|1817
6ENJ|1|A|U|1818
6ENJ|1|A|A|1819
6ENJ|1|A|U|1820
6ENJ|1|A|A|1821

Current chains

Chain A

23S Ribosomal RNA

Nearby chains

Chain C

50S ribosomal protein L2

Chain a

Small subunit ribosomal RNA; SSU rRNA