IL_6ENJ_085

3D structure

PDB id

6ENJ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Polyproline-stalled ribosome in the presence of A+P site tRNA and elongation-factor P (EF-P)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.7 Å

Loop

Sequence

GUGUAGGAUAGG*CCC

Length

15 nucleotides

Bulged bases

6ENJ|1|A|U|2111, 6ENJ|1|A|G|2116, 6ENJ|1|A|U|2118

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6ENJ_085 not in the Motif Atlas

Homologous match to IL_3U4M_001

Geometric discrepancy: 0.552

The information below is about IL_3U4M_001

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

No text annotation

Motif group

IL_71625.3

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

79

Unit IDs

6ENJ|1|A|G|2110
6ENJ|1|A|U|2111
6ENJ|1|A|G|2112
6ENJ|1|A|U|2113
6ENJ|1|A|A|2114
6ENJ|1|A|G|2115
6ENJ|1|A|G|2116
6ENJ|1|A|A|2117
6ENJ|1|A|U|2118
6ENJ|1|A|A|2119
6ENJ|1|A|G|2120
6ENJ|1|A|G|2121
*
6ENJ|1|A|C|2177
6ENJ|1|A|C|2178
6ENJ|1|A|C|2179

Current chains

Chain A

23S Ribosomal RNA

Nearby chains

Chain 7

50S ribosomal protein L1

Chain g

30S ribosomal protein S7

Chain w

Elongation factor P