IL_6ENU_068

3D structure

PDB id

6ENU (explore in PDB, NAKB, or RNA 3D Hub)

Description

Polyproline-stalled ribosome in the presence of elongation-factor P (EF-P)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

UGCAAAC*GGACGUAUA

Length

16 nucleotides

Bulged bases

6ENU|1|A|A|1801, 6ENU|1|A|C|1816, 6ENU|1|A|U|1820

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6ENU_068 not in the Motif Atlas

Homologous match to IL_5J7L_313

Geometric discrepancy: 0.0619

The information below is about IL_5J7L_313

Detailed Annotation

Kink-turn related

Broad Annotation

No text annotation

Motif group

IL_17069.5

Basepair signature

cWW-tSH-tHH-cSS-tWW-tHH-tSS-cWW

Number of instances in this motif group

5

Unit IDs

6ENU|1|A|U|1798
6ENU|1|A|G|1799
6ENU|1|A|C|1800
6ENU|1|A|A|1801
6ENU|1|A|A|1802
6ENU|1|A|A|1803
6ENU|1|A|C|1804
*
6ENU|1|A|G|1813
6ENU|1|A|G|1814
6ENU|1|A|A|1815
6ENU|1|A|C|1816
6ENU|1|A|G|1817
6ENU|1|A|U|1818
6ENU|1|A|A|1819
6ENU|1|A|U|1820
6ENU|1|A|A|1821

Current chains

Chain A

23S Ribosomal RNA

Nearby chains

Chain C

50S ribosomal protein L2

Chain a

Small subunit ribosomal RNA; SSU rRNA