IL_6ERI_008

3D structure

PDB id

6ERI (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the chloroplast ribosome with chl-RRF and hibernation-promoting factor

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

GAG*CUGAC

Length

8 nucleotides

Bulged bases

6ERI|1|AA|G|377, 6ERI|1|AA|A|378

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6ERI_008 not in the Motif Atlas

Geometric match to IL_7ELQ_002

Geometric discrepancy: 0.2638

The information below is about IL_7ELQ_002

Detailed Annotation

Isolated non-canonical cWW with bulges

Broad Annotation

Isolated non-canonical cWW with bulges

Motif group

IL_07785.1

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

33

Unit IDs

6ERI|1|AA|G|278
6ERI|1|AA|A|279
6ERI|1|AA|G|280
*
6ERI|1|AA|C|375
6ERI|1|AA|U|376
6ERI|1|AA|G|377
6ERI|1|AA|A|378
6ERI|1|AA|C|379

Current chains

Chain AA

23S ribosomal RNA

Nearby chains