IL_6ERI_014

3D structure

PDB id

6ERI (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the chloroplast ribosome with chl-RRF and hibernation-promoting factor

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

GAAC*GAGUGAAAUAGAAC

Length

18 nucleotides

Bulged bases

6ERI|1|AA|U|515, 6ERI|1|AA|A|519

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6ERI_014 not in the Motif Atlas

Homologous match to IL_7A0S_009

Geometric discrepancy: 0.1028

The information below is about IL_7A0S_009

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_44923.2

Basepair signature

cWW-cWS-tSH-L-tWH-cWW-tSS-tSH-L-R-L

Number of instances in this motif group

10

Unit IDs

6ERI|1|AA|G|493
6ERI|1|AA|A|494
6ERI|1|AA|A|495
6ERI|1|AA|C|496
*
6ERI|1|AA|G|507
6ERI|1|AA|A|508
6ERI|1|AA|G|509
6ERI|1|AA|U|510
6ERI|1|AA|G|511
6ERI|1|AA|A|512
6ERI|1|AA|A|513
6ERI|1|AA|A|514
6ERI|1|AA|U|515
6ERI|1|AA|A|516
6ERI|1|AA|G|517
6ERI|1|AA|A|518
6ERI|1|AA|A|519
6ERI|1|AA|C|520

Current chains

Chain AA

23S ribosomal RNA

Nearby chains

Chain AR

50S ribosomal protein L21, chloroplastic

Chain AS

50S ribosomal protein L22, chloroplastic

Chain AU

50S ribosomal protein L24, chloroplastic