IL_6ERI_017

3D structure

PDB id

6ERI (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the chloroplast ribosome with chl-RRF and hibernation-promoting factor

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

UUAAG*CGGAG

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6ERI_017 not in the Motif Atlas

Homologous match to IL_5J7L_258

Geometric discrepancy: 0.1166

The information below is about IL_5J7L_258

Detailed Annotation

AAA cross-strand stack

Broad Annotation

AAA cross-strand stack

Motif group

IL_66798.2

Basepair signature

cWW-L-R-L-R-tHS-cWW

Number of instances in this motif group

6

Unit IDs

6ERI|1|AA|U|616
6ERI|1|AA|U|617
6ERI|1|AA|A|618
6ERI|1|AA|A|619
6ERI|1|AA|G|620
*
6ERI|1|AA|C|630
6ERI|1|AA|G|631
6ERI|1|AA|G|632
6ERI|1|AA|A|633
6ERI|1|AA|G|634

Current chains

Chain AA

23S ribosomal RNA

Nearby chains

Chain AE

50S ribosomal protein L4, chloroplastic

Chain AL

50S ribosomal protein L15, chloroplastic