IL_6ERI_025

3D structure

PDB id

6ERI (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the chloroplast ribosome with chl-RRF and hibernation-promoting factor

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

GGG*CACUC

Length

8 nucleotides

Bulged bases

6ERI|1|AA|G|787, 6ERI|1|AA|A|799, 6ERI|1|AA|C|800

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6ERI_025 not in the Motif Atlas

Geometric match to IL_5J7L_265

Geometric discrepancy: 0.0791

The information below is about IL_5J7L_265

Detailed Annotation

Multiple bulged bases

Broad Annotation

No text annotation

Motif group

IL_06549.2

Basepair signature

cWW-cWW

Number of instances in this motif group

6

Unit IDs

6ERI|1|AA|G|786
6ERI|1|AA|G|787
6ERI|1|AA|G|788
*
6ERI|1|AA|C|798
6ERI|1|AA|A|799
6ERI|1|AA|C|800
6ERI|1|AA|U|801
6ERI|1|AA|C|802

Current chains

Chain AA

23S ribosomal RNA

Nearby chains

Chain AC

50S ribosomal protein L2, chloroplastic

Chain AS

50S ribosomal protein L22, chloroplastic

Chain Ac

50S ribosomal protein L34, chloroplastic