IL_6ERI_026

3D structure

PDB id

6ERI (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the chloroplast ribosome with chl-RRF and hibernation-promoting factor

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

CAG*CCAG

Length

7 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6ERI_026 not in the Motif Atlas

Geometric match to IL_8GLP_064

Geometric discrepancy: 0.3375

The information below is about IL_8GLP_064

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_16315.2

Basepair signature

cWW-cWW-L-cWW

Number of instances in this motif group

4

Unit IDs

6ERI|1|AA|C|848
6ERI|1|AA|A|849
6ERI|1|AA|G|850
*
6ERI|1|AA|C|967
6ERI|1|AA|C|968
6ERI|1|AA|A|969
6ERI|1|AA|G|970

Current chains

Chain AA

23S ribosomal RNA

Nearby chains

Chain AL

50S ribosomal protein L15, chloroplastic

Chain Ad

50S ribosomal protein L35, chloroplastic