IL_6ERI_027

3D structure

PDB id

6ERI (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the chloroplast ribosome with chl-RRF and hibernation-promoting factor

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

GGGGUAA*UGAAUAC

Length

14 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6ERI_027 not in the Motif Atlas

Homologous match to IL_5J7L_270

Geometric discrepancy: 0.1267

The information below is about IL_5J7L_270

Detailed Annotation

7x7 Sarcin-Ricin with intercalated A; G-bulge

Broad Annotation

Sarcin-Ricin; G-bulge

Motif group

IL_29198.2

Basepair signature

cWW-cWW-L-R-cSH-R-tWH-tHS-cWW

Number of instances in this motif group

4

Unit IDs

6ERI|1|AA|G|866
6ERI|1|AA|G|867
6ERI|1|AA|G|868
6ERI|1|AA|G|869
6ERI|1|AA|U|870
6ERI|1|AA|A|871
6ERI|1|AA|A|872
*
6ERI|1|AA|U|924
6ERI|1|AA|G|925
6ERI|1|AA|A|926
6ERI|1|AA|A|927
6ERI|1|AA|U|928
6ERI|1|AA|A|929
6ERI|1|AA|C|930

Current chains

Chain AA

23S ribosomal RNA

Nearby chains

Chain AM

50S ribosomal protein L16, chloroplastic

Chain AW

50S ribosomal protein L27, chloroplastic

Chain Ax

5S ribosomal RNA; 5S rRNA