IL_6ERI_028

3D structure

PDB id

6ERI (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the chloroplast ribosome with chl-RRF and hibernation-promoting factor

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

AA*UCU

Length

5 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6ERI_028 not in the Motif Atlas

Geometric match to IL_7RQB_028

Geometric discrepancy: 0.1258

The information below is about IL_7RQB_028

Detailed Annotation

Minor groove platform

Broad Annotation

No text annotation

Motif group

IL_42622.4

Basepair signature

cWW-cSH-cWW

Number of instances in this motif group

33

Unit IDs

6ERI|1|AA|A|872
6ERI|1|AA|A|873
*
6ERI|1|AA|U|922
6ERI|1|AA|C|923
6ERI|1|AA|U|924

Current chains

Chain AA

23S ribosomal RNA

Nearby chains

Chain AM

50S ribosomal protein L16, chloroplastic

Chain AW

50S ribosomal protein L27, chloroplastic

Chain Ax

5S ribosomal RNA; 5S rRNA