IL_6ERI_047

3D structure

PDB id

6ERI (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the chloroplast ribosome with chl-RRF and hibernation-promoting factor

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

GGUU*AC

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6ERI_047 not in the Motif Atlas

Homologous match to IL_4WF9_049

Geometric discrepancy: 0.132

The information below is about IL_4WF9_049

Detailed Annotation

Major groove platform; stack outside cWW

Broad Annotation

No text annotation

Motif group

IL_74641.2

Basepair signature

cWW-tSH-cWW-L

Number of instances in this motif group

33

Unit IDs

6ERI|1|AA|G|1331
6ERI|1|AA|G|1332
6ERI|1|AA|U|1333
6ERI|1|AA|U|1334
*
6ERI|1|AA|A|1639
6ERI|1|AA|C|1640

Current chains

Chain AA

23S ribosomal RNA

Nearby chains

Chain AT

50S ribosomal protein L23, chloroplastic

Chain Ac

50S ribosomal protein L34, chloroplastic