IL_6ERI_048

3D structure

PDB id

6ERI (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the chloroplast ribosome with chl-RRF and hibernation-promoting factor

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

GCAAG*CAC

Length

8 nucleotides

Bulged bases

6ERI|1|AA|A|1353

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6ERI_048 not in the Motif Atlas

Homologous match to IL_7RQB_051

Geometric discrepancy: 0.1884

The information below is about IL_7RQB_051

Detailed Annotation

C-loop

Broad Annotation

No text annotation

Motif group

IL_63596.6

Basepair signature

cWW-cWS-cSH-tWH-cWW-L

Number of instances in this motif group

14

Unit IDs

6ERI|1|AA|G|1340
6ERI|1|AA|C|1341
6ERI|1|AA|A|1342
6ERI|1|AA|A|1343
6ERI|1|AA|G|1344
*
6ERI|1|AA|C|1352
6ERI|1|AA|A|1353
6ERI|1|AA|C|1354

Current chains

Chain AA

23S ribosomal RNA

Nearby chains

Chain AS

50S ribosomal protein L22, chloroplastic