IL_6ERI_054

3D structure

PDB id

6ERI (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the chloroplast ribosome with chl-RRF and hibernation-promoting factor

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

GGAG*CAUAC

Length

9 nucleotides

Bulged bases

6ERI|1|AA|U|1593

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6ERI_054 not in the Motif Atlas

Homologous match to IL_5J7L_296

Geometric discrepancy: 0.3395

The information below is about IL_5J7L_296

Detailed Annotation

Tandem non-canonical cWW pairs

Broad Annotation

No text annotation

Motif group

IL_58112.2

Basepair signature

cWW-cWW-L-R-cWW

Number of instances in this motif group

4

Unit IDs

6ERI|1|AA|G|1453
6ERI|1|AA|G|1454
6ERI|1|AA|A|1455
6ERI|1|AA|G|1456
*
6ERI|1|AA|C|1591
6ERI|1|AA|A|1592
6ERI|1|AA|U|1593
6ERI|1|AA|A|1594
6ERI|1|AA|C|1595

Current chains

Chain AA

23S ribosomal RNA

Nearby chains

Chain Aw

50S ribosomal protein 5 alpha, chloroplastic