IL_6ERI_055

3D structure

PDB id

6ERI (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the chloroplast ribosome with chl-RRF and hibernation-promoting factor

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

CUAG*CGAUG

Length

9 nucleotides

Bulged bases

6ERI|1|AA|U|1588

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6ERI_055 not in the Motif Atlas

Homologous match to IL_7RQB_057

Geometric discrepancy: 0.1108

The information below is about IL_7RQB_057

Detailed Annotation

tSH-tHW

Broad Annotation

No text annotation

Motif group

IL_04059.1

Basepair signature

cWW-tWH-tHS-cWW

Number of instances in this motif group

13

Unit IDs

6ERI|1|AA|C|1458
6ERI|1|AA|U|1459
6ERI|1|AA|A|1460
6ERI|1|AA|G|1461
*
6ERI|1|AA|C|1585
6ERI|1|AA|G|1586
6ERI|1|AA|A|1587
6ERI|1|AA|U|1588
6ERI|1|AA|G|1589

Current chains

Chain AA

23S ribosomal RNA

Nearby chains

Chain Aw

50S ribosomal protein 5 alpha, chloroplastic