IL_6ERI_057

3D structure

PDB id

6ERI (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the chloroplast ribosome with chl-RRF and hibernation-promoting factor

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

CAAG*CGAG

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6ERI_057 not in the Motif Atlas

Homologous match to IL_5J7L_299

Geometric discrepancy: 0.3458

The information below is about IL_5J7L_299

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_68574.4

Basepair signature

cWW-tHH-tHS-cWW

Number of instances in this motif group

3

Unit IDs

6ERI|1|AA|C|1487
6ERI|1|AA|A|1488
6ERI|1|AA|A|1489
6ERI|1|AA|G|1490
*
6ERI|1|AA|C|1554
6ERI|1|AA|G|1555
6ERI|1|AA|A|1556
6ERI|1|AA|G|1557

Current chains

Chain AA

23S ribosomal RNA

Nearby chains

Chain Aw

50S ribosomal protein 5 alpha, chloroplastic