IL_6ERI_060

3D structure

PDB id

6ERI (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the chloroplast ribosome with chl-RRF and hibernation-promoting factor

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

CCAG*UGAAG

Length

9 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6ERI_060 not in the Motif Atlas

Homologous match to IL_5J7L_303

Geometric discrepancy: 0.186

The information below is about IL_5J7L_303

Detailed Annotation

UAA/GAN variation

Broad Annotation

UAA/GAN variation

Motif group

IL_23774.1

Basepair signature

cWW-L-R-L-tHS-cWW

Number of instances in this motif group

11

Unit IDs

6ERI|1|AA|C|1560
6ERI|1|AA|C|1561
6ERI|1|AA|A|1562
6ERI|1|AA|G|1563
*
6ERI|1|AA|U|1576
6ERI|1|AA|G|1577
6ERI|1|AA|A|1578
6ERI|1|AA|A|1579
6ERI|1|AA|G|1580

Current chains

Chain AA

23S ribosomal RNA

Nearby chains