IL_6ERI_071

3D structure

PDB id

6ERI (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the chloroplast ribosome with chl-RRF and hibernation-promoting factor

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

UCAAG*CGAAG

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6ERI_071 not in the Motif Atlas

Homologous match to IL_7RQB_074

Geometric discrepancy: 0.1718

The information below is about IL_7RQB_074

Detailed Annotation

UAA/GAN with extra stack

Broad Annotation

No text annotation

Motif group

IL_90318.1

Basepair signature

cWW-tSH-L-R-L-R-cWW

Number of instances in this motif group

3

Unit IDs

6ERI|1|AA|U|1861
6ERI|1|AA|C|1862
6ERI|1|AA|A|1863
6ERI|1|AA|A|1864
6ERI|1|AA|G|1865
*
6ERI|1|AA|C|1901
6ERI|1|AA|G|1902
6ERI|1|AA|A|1903
6ERI|1|AA|A|1904
6ERI|1|AA|G|1905

Current chains

Chain AA

23S ribosomal RNA

Nearby chains

Chain AC

50S ribosomal protein L2, chloroplastic

Chain AH

50S ribosomal protein L9, chloroplastic