IL_6ERI_080

3D structure

PDB id

6ERI (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the chloroplast ribosome with chl-RRF and hibernation-promoting factor

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

UUCC*GUAGA

Length

9 nucleotides

Bulged bases

6ERI|1|AA|G|2255

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6ERI_080 not in the Motif Atlas

Geometric match to IL_7RQB_011

Geometric discrepancy: 0.2586

The information below is about IL_7RQB_011

Detailed Annotation

tSH-tHW

Broad Annotation

No text annotation

Motif group

IL_04059.1

Basepair signature

cWW-tWH-tHS-cWW

Number of instances in this motif group

13

Unit IDs

6ERI|1|AA|U|2095
6ERI|1|AA|U|2096
6ERI|1|AA|C|2097
6ERI|1|AA|C|2098
*
6ERI|1|AA|G|2252
6ERI|1|AA|U|2253
6ERI|1|AA|A|2254
6ERI|1|AA|G|2255
6ERI|1|AA|A|2256

Current chains

Chain AA

23S ribosomal RNA

Nearby chains

Chain AC

50S ribosomal protein L2, chloroplastic

Chain AX

50S ribosomal protein L28, chloroplastic