IL_6ERI_093

3D structure

PDB id

6ERI (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the chloroplast ribosome with chl-RRF and hibernation-promoting factor

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

CUU*GUACG

Length

8 nucleotides

Bulged bases

6ERI|1|AA|A|2589, 6ERI|1|AA|C|2590

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6ERI_093 not in the Motif Atlas

Geometric match to IL_3MOJ_004

Geometric discrepancy: 0.3847

The information below is about IL_3MOJ_004

Detailed Annotation

Single stack bend

Broad Annotation

No text annotation

Motif group

IL_15011.3

Basepair signature

cWW-L-cWW

Number of instances in this motif group

48

Unit IDs

6ERI|1|AA|C|2529
6ERI|1|AA|U|2530
6ERI|1|AA|U|2531
*
6ERI|1|AA|G|2587
6ERI|1|AA|U|2588
6ERI|1|AA|A|2589
6ERI|1|AA|C|2590
6ERI|1|AA|G|2591

Current chains

Chain AA

23S ribosomal RNA

Nearby chains

Chain AD

50S ribosomal protein L3, chloroplastic

Chain AJ

50S ribosomal protein L13, chloroplastic