IL_6ERI_096

3D structure

PDB id

6ERI (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the chloroplast ribosome with chl-RRF and hibernation-promoting factor

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

UUGAG*CAAGAUGAG

Length

14 nucleotides

Bulged bases

6ERI|1|AA|G|2798

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6ERI_096 not in the Motif Atlas

Homologous match to IL_4WF9_099

Geometric discrepancy: 0.1065

The information below is about IL_4WF9_099

Detailed Annotation

tSH-tHS-tHW

Broad Annotation

tSH-tHS-tHW

Motif group

IL_04638.4

Basepair signature

cWW-tSH-tHW-tHS-L-cWW-L-L

Number of instances in this motif group

6

Unit IDs

6ERI|1|AA|U|2653
6ERI|1|AA|U|2654
6ERI|1|AA|G|2655
6ERI|1|AA|A|2656
6ERI|1|AA|G|2657
*
6ERI|1|AA|C|2792
6ERI|1|AA|A|2793
6ERI|1|AA|A|2794
6ERI|1|AA|G|2795
6ERI|1|AA|A|2796
6ERI|1|AA|U|2797
6ERI|1|AA|G|2798
6ERI|1|AA|A|2799
6ERI|1|AA|G|2800

Current chains

Chain AA

23S ribosomal RNA

Nearby chains

Chain AD

50S ribosomal protein L3, chloroplastic

Chain AJ

50S ribosomal protein L13, chloroplastic