IL_6ERI_104

3D structure

PDB id

6ERI (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the chloroplast ribosome with chl-RRF and hibernation-promoting factor

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

GG*UCC

Length

5 nucleotides

Bulged bases

6ERI|1|AB|C|83

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6ERI_104 not in the Motif Atlas

Geometric match to IL_7RQB_108

Geometric discrepancy: 0.0779

The information below is about IL_7RQB_108

Detailed Annotation

Single bulged C

Broad Annotation

No text annotation

Motif group

IL_61258.12

Basepair signature

cWW-L-cWW

Number of instances in this motif group

40

Unit IDs

6ERI|1|AB|G|42
6ERI|1|AB|G|43
*
6ERI|1|AB|U|82
6ERI|1|AB|C|83
6ERI|1|AB|C|84

Current chains

Chain AB

4.5S ribosomal RNA

Nearby chains

Chain AN

50S ribosomal protein L17, chloroplastic

Chain AP

50S ribosomal protein L19, chloroplastic