IL_6ERI_105
3D structure
- PDB id
- 6ERI (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of the chloroplast ribosome with chl-RRF and hibernation-promoting factor
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3 Å
Loop
- Sequence
- CAA*UGAG
- Length
- 7 nucleotides
- Bulged bases
- 6ERI|1|AB|A|77
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_6ERI_105 not in the Motif Atlas
- Geometric match to IL_4V9F_076
- Geometric discrepancy: 0.1747
- The information below is about IL_4V9F_076
- Detailed Annotation
- Isolated tHS basepair with bulges
- Broad Annotation
- No text annotation
- Motif group
- IL_87316.2
- Basepair signature
- cWW-tHS-cWW
- Number of instances in this motif group
- 13
Unit IDs
6ERI|1|AB|C|47
6ERI|1|AB|A|48
6ERI|1|AB|A|49
*
6ERI|1|AB|U|75
6ERI|1|AB|G|76
6ERI|1|AB|A|77
6ERI|1|AB|G|78
Current chains
- Chain AB
- 4.5S ribosomal RNA
Nearby chains
- Chain AA
- Large subunit ribosomal RNA; LSU rRNA
- Chain AD
- 50S ribosomal protein L3, chloroplastic
- Chain AN
- 50S ribosomal protein L17, chloroplastic
- Chain AP
- 50S ribosomal protein L19, chloroplastic
Coloring options: