IL_6ERI_119

3D structure

PDB id

6ERI (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the chloroplast ribosome with chl-RRF and hibernation-promoting factor

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

GAAC*GGC

Length

7 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6ERI_119 not in the Motif Atlas

Homologous match to IL_5J7L_009

Geometric discrepancy: 0.1334

The information below is about IL_5J7L_009

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

Isolated non-canonical cWW pair

Motif group

IL_57744.1

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

22

Unit IDs

6ERI|1|BA|G|113
6ERI|1|BA|A|114
6ERI|1|BA|A|115
6ERI|1|BA|C|116
*
6ERI|1|BA|G|203
6ERI|1|BA|G|204
6ERI|1|BA|C|205

Current chains

Chain BA

16S ribosomal RNA

Nearby chains

Chain BP

30S ribosomal protein S16, chloroplastic

Chain BQ

30S ribosomal protein S17, chloroplastic

Chain BT

30S ribosomal protein S20, chloroplastic