IL_6ERI_122

3D structure

PDB id

6ERI (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the chloroplast ribosome with chl-RRF and hibernation-promoting factor

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

GAUUAG*CGAUGAUC

Length

14 nucleotides

Bulged bases

6ERI|1|BA|U|216, 6ERI|1|BA|U|252

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6ERI_122 not in the Motif Atlas

Homologous match to IL_5J7L_014

Geometric discrepancy: 0.1343

The information below is about IL_5J7L_014

Detailed Annotation

Kink-turn with non-sequential stacking

Broad Annotation

Kink-turn

Motif group

IL_46174.3

Basepair signature

cWW-cSS-tSS-tSH-L-cWW-tHW-cWW

Number of instances in this motif group

5

Unit IDs

6ERI|1|BA|G|214
6ERI|1|BA|A|215
6ERI|1|BA|U|216
6ERI|1|BA|U|217
6ERI|1|BA|A|218
6ERI|1|BA|G|219
*
6ERI|1|BA|C|249
6ERI|1|BA|G|250
6ERI|1|BA|A|251
6ERI|1|BA|U|252
6ERI|1|BA|G|253
6ERI|1|BA|A|254
6ERI|1|BA|U|255
6ERI|1|BA|C|256

Current chains

Chain BA

16S ribosomal RNA

Nearby chains

Chain BL

30S ribosomal protein S12, chloroplastic

Chain BQ

30S ribosomal protein S17, chloroplastic